Gluconeogenesis pathway with enzymes: Introduction, Steps, Regulation, and Function

doctor with stethoscope, artgraphics


Before you go into this article, I would highly recommend learning and reading about Glycolysis and then, after glycolysis, the Krebs cycle, because if you knew these topics, 80% of your concepts will be clear, and 20% of Gluconeogenesis is just here because in gluconeogenesis, the processes of Kreb’s cycle and glycolysis have to be reversed.

In this article, we will discuss the gluconeogenesis pathway in detail. We will also discuss the enzymes that are involved in the pathway, as well as the conditions that favor gluconeogenesis.

Before going to the “Gluconeogenesis pathway with enzymes,”

Let me explain gluconeogenesis a little.

What is gluconeogenesis?

Just carefully look at the name, and you will get the meaning.

Gluco = glucose

Neo = new

Genesis = synthesis

when gluconeogenesis occurs?

So Gluconeogenesis is the synthesis of new glucose from non-carbohydrate or non-glucose sources.


The process of producing glucose from noncarbohydrate sources is called Gluconeogenesis.

Is there any difference between gluconeogenesis and glucogenesis?

These both are the same terms, however, glycogenesis is different which means the synthesis of glycogen from the chaining of glucose.

And what is meant by non-carbohydrate or non-glucose sources?

The non-carbohydrate or non-glucose source is the molecules other than carbohydrates like proteins, lipids, etc.

Usually, glucose is broken down to release energy but here the myth is the opposite.


Let me ask you a question

Do you know where extra glucose is stored in the body?

Liver, the storehouse of glucose

The liver, Liver is the storehouse of glucose where extra glucose is stored in the form of Glycogen.

And even when the glucose becomes more after storage in the liver then where does it go for storage?

Muscle cells, fat cells (adipocytes)

Muscle cells, fat cells (adipocytes).

And when this extra glucose is released?

Glucose release by liver

When there is a low blood glucose level then liver glycogen is back converted to glucose and released into the blood for their action.

But did you think what will happen if all the liver glycogen is used like in a fasting state?

Not exactly.

That’s why we are discussing “Gluconeogenesis pathway with enzymes”

When all your glycogen is used then gluconeogenesis becomes active to synthesize new glucose because, in the fasting state, there is no supply of glucose from GIT, also the blood glucose level is constantly used.

But if I am at rest why the body needs glucose?




Renal medulla,


Cornea and lens

Require a constant supply of glucose.

But where does gluconeogenesis take place i.e. the organs?

One gluconeogenesis organ (location) most of you know, is the liver where the major gluconeogenesis occurs, but the kidney also does some of the gluconeogenesis while the epithelium of GIT has very little ability to do this.


How does the process start?

In the glycolysis and Krebs cycle, the glucose was broken down to release energy but here we have to reverse the process to produce glucose.

So we have just to reverse these processes in the gluconeogenic pathway?

Yes, but it is not so easy just to reverse the process.


Because we have 3 irreversible steps of glycolysis which are one way, it cannot be backed directly by the same enzymes.


The cells have some mechanism to reverse these steps but with different enzymes and different pathways.

What are those steps?

irreversible steps of glycolysis

Let me just quickly give you a very brief review of those steps (in glycolysis) in a picture then I will go with gluconeogenesis that how that step is reversed.

Look at the picture and see steps 1, 3, and step 9 of glycolysis.

But if there is no glucose how these processes are reversed?

Good question. For Gluconeogenesis some raw materials are needed. Glucose is a six-carbon compound so we need some carbon skeleton from which we can make new glucose.

The raw materials for gluconeogenesis are:




Triglycerides (adipocytes).

i. Lactate:

From where we can get lactate?

Before going to discuss Lactate you must know that lactate can be converted to pyruvate. An enzyme called Lactate Dehydrogenase (as the name indicates) removes Hydrogen from Lactate and converts it to pyruvate. Hydrogen is used to convert NAD+ into NADH. Pyruvate and lactate are interconvertible molecules.   


As it is discussed Lactate can be converted to Pyruvate But from where to get Lactate?Muscles and RBCs

From Muscles and RBCs.


Muscle glycogen breakdown

As you know, glucose is also stored in Muscle cells. The muscle cells release Glycogen in the form of Glucose-6-phosphate. But remember that muscle glycogen is not converted to glucose rather it is converted to Glucose-6-phosphate, and also muscle doesn’t have a Glucose phosphatase enzyme that can remove phosphate from Glucose-6-phosphate and convert it to glucose so the muscle cannot directly release glucose to blood rather it converts it into pyruvate after breakdown pathway.

But the product is pyruvate, not lactate?

Pyruvate into lactate

The enzymes which convert pyruvate into Lactate are present in muscle cells so the muscle’s pyruvate is converted into lactate by adding hydrogen to it from NADH and releasing NAD+.


The Lactate is then released into the blood and then moves to the liver.

RBCs also release lactate into the blood because RBCs don’t have mitochondria so there is anaerobic glycolysis and anaerobic glycolysis produces lactate on their end.

After entry into hepatocytes, it starts the gluconeogenesis pathway steps (which will be discussed later).

ii. Pyruvate:


Pyruvate itself sometimes leaks out from muscle cells and enters to gluconeogenesis pathway.

iii. Alanine:


In muscle an amino (NH2) group (Amination) is added to pyruvate which results in the formation of an amino acid called alanine, then alanine is released into the blood from where it moves to the liver. In the liver, deamination removes the amino (NH2) from alanine and is converted back to pyruvate in the liver.

Amino acid after deamination

Let me tell you more about amino acids. Most of the amino acids after deamination left with a carbon skeleton which is called α-ketoglutaric acid and the α-ketoglutaric acid (carbon skeleton) then reverses the Krebs cycle to synthesize a new glucose molecule.

There are some amino acids that are converted to propionyl co A and then propionyl co A is then converted to succinyl co A to reverse the Krebs cycle pathway up to glucose of glycolysis. Propionyl co A is also synthesized from β-oxidation of odd-chain fatty acid but this pathway is negligible in humans.

There are some other amino acids that after deamination and further modification are converted to oxaloacetate which again reverses the Krebs cycle to glucose of glycolysis which is known as amino acid gluconeogenesis.

So it means the carbon skeleton of different amino acids after deamination is used to make new glucose from it and those amino acids that provide these carbon skeletons are called gluconeogenic amino acids.

so we also concluded from the above discussion that in a prolonged fasting state proteins are catabolized to release amino acids which then participate in gluconeogenesis.

iv. Triglycerides (Adipocytes):

In a fasting state when the glucose supply is stopped, the fat cells also called adipocytes that have triglycerides.

Do you know triglycerides?

Not a lot.


Well, triglycerides have three fatty acid molecules with glycerol.



Triglycerides are broken down to free fatty acid and free glycerol from adipocytes by the process of lipolysis. The free glycerol and fatty acids are then released into the blood, from where they move to the liver.

Formation of Dihydroxyacetone phosphate (DHAP) in liver

In the liver, an enzyme called Glycerol kinase adds a phosphate to it and converts it to glycerol phosphate, and then after multiple conversion steps, it is eventually converted to dihydroxyacetone phosphate which is then reversed to make glucose (will be discussed later)so gluconeogenesis from glycerol is another way to make new glucose.

What about fatty acids?

Fatty acids move to mitochondria where it is converted to Acetyl Co-A and it also activates the enzyme pyruvate carboxylase (will be discussed later).

So we have got the raw materials for gluconeogenesis now we have to convert it to glucose by reversing the process.

But just by reversing the Krebs cycle and glycolysis process, we can get new glucose from these raw materials, isn’t it?


In glycolysis, most of the steps have enzymes that can direct the reaction forward as well as in reverse direction so that steps can be easily reversed by the same enzyme in gluconeogenesis but some steps are the only forward direction. To reverse those steps we have to find an alternative pathway.

Which steps are these?

There are three steps in glycolysis that are irreversible i.e

Pyruvate to phosphoenolpyruvate by pyruvate kinase enzyme,

 Fructose 1, 6 bisphosphates to Fructose-6-phosphate by phosphofructokinase,

Glucose-6phosphate to Glucose by hexokinase.

We have these three blocks which can’t be reversed by the enzyme that moves it in the forward direction so here we need some special enzymes which can reverse the reaction to make glucose.

We are going to discuss these steps one by one.

Do you mean “Pyruvate to phosphoenolpyruvate”?

Exactly, because pyruvate kinase can’t reverse the process, it needs another special enzyme to reverse it.

Reverse of pyruvate into Oxaloacetate by pyruvate carboxylase

Do you see pyruvate in the Krebs cycle in the picture?

Yes, I can see it.

Here an enzyme called pyruvate carboxylase adds carbon dioxide (CO2) to pyruvate and converts it to Oxaloacetate.

How does pyruvate carboxylase work?

Manganese (Mn+), Magnesium (Mg+) ions, and Biotin vitamins are required for pyruvate carboxylase functioning while they require ATP for glucose production because we are going to make a molecule.

Biotin is very important for pyruvate carboxylase because it is the Biotin in pyruvate carboxylase which helps this enzyme to transfer the CO2 to pyruvate.

Here I want to tell you about a medical condition.

What is that situation?

Eggs especially uncooked eggs have a special protein called Avidin which binds avidly/strongly with biotin so for those people who eat uncooked eggs, their biotin is not available which then stops the functioning of pyruvate carboxylase and eventually leads to trouble in the gluconeogenesis pathway.

But how this enzyme is activated?

It is activated by acetyl Coenzyme A present in mitochondria for the Krebs cycle. As already discussed after lipolysis glycerol and fatty acids are released, fatty acids move to mitochondria and are converted to Acetyl Coenzyme A which then activates pyruvate carboxylase and indirectly stimulates gluconeogenesis.

Also, the fatty acids after conversion to Acetyl Coenzyme A don’t activate the pyruvate carboxylase, reverse the Krebs cycle, and make the glucose after reversing glycolysis.

Now, what will happen to oxaloacetate?

The pyruvate is converted to oxaloacetate but still, we have a problem.

What is it?

Malate shuttle

The problem is that oxaloacetate is a very important component of the Krebs cycle so it can’t leave the mitochondria.

So what do cells do then?

The cell breaks NADH to NAD+ and releases the hydrogen to cover the oxaloacetate by an enzyme called mitochondrial Malate dehydrogenase. The resultant compound after covering by hydrogen is now called Malate. Now the Malate can leave the mitochondria.


In the cytosol, the same malate dehydrogenase enzyme is present, where it is called cytosolic malate dehydrogenase which converts back the Malate to oxaloacetate by removing hydrogen from it.


This process of malate coming out is called the Malate shuttle.

Still, we didn’t get phosphoenolpyruvate?

Oxaloacetate conversion into phosphoenolpyruvate by Pyruvate carboxylase

Don’t worry, here is the last step in which the oxaloacetate is converted to phosphoenolpyruvate by the phosphoenolpyruvate carboxykinase enzyme. This enzyme removes carbon dioxide as it was added before and adds phosphate to it to make phosphoenol pyruvate because the kinase enzyme adds phosphate to the molecule.

Now, what will happen?

As shown in the picture the phosphoenolpyruvate is then converted back to 2 phosphoglycerates, 3 phosphoglycerates, 1,3 bisphosphoglycerate, glyceraldehyde-3-phosphate, and Fructose 1, 6 bisphosphates respectively by the same enzyme as it was converted forward in glycolysis.

But here is another block point that can’t be directly reversed by phosphofructo kinase-I as it did forward direction.

Before going to reverse this step let me review their forward action first then you will understand the reverse step.

Do you know which enzyme converts Fructose-6-phosphate to Fructose 1,6 bisphosphate?

That was phosphofructo kinase-I.

That’s good.

But who activated this enzyme?

some of them is converted to Fructose 2, 6 bisphosphate which superbly activates Phosphofructo kinase-1 to convert Fructose-6-phosphate into Fructose2, 6 bisphosphate

During the conversion of Fructose-6-phosphate to Fructose 1, 6 bisphosphates some of them are converted to Fructose 2, 6 bisphosphates by phosphofrcto kinase-II as it is adding phosphate at Carbon number 2. The concentration of Fructose 2, 6 bisphosphates also inhibits another enzyme called Fructose 1, 6 bisphosphatase which reverses the reaction by converting Fructose 1, 6 bisphosphate to Fructose-6-phosphate. The Fructose 2, 6 bisphosphate then strongly stimulates phosphofructo kinase-I to convert fructose-6-phosphate to Fructose 1, 6 bisphosphate by adding phosphate at carbon 1 and proceeding the pathway in the forward direction.

But who activated phosphofrcto kinase-II?

There is a hermaphrodite-like enzyme that has two parts one is phosphofrcto kinase-II (kinases add phosphate to the molecule) and the other part is called Fructose 2, 6 phosphatases as it removes phosphate from Fructose 2, 6 bisphosphate (phosphatase remove phosphate).

But which part of the enzyme (kinases or phosphatases) are activated, and how do they decide?

Phosphofructo kinase-II (hermaphrodite character enzyme)

When Fructose-6-phosphate is high the phosphofrcto kinase-II is activated which converts some of Fructose-6-phosphate to Fructose 2, 6 bisphosphate which in turn activates phosphofrcto kinase-I and proceeds the reaction in the forward direction.

But how Fructose 2, 6 phosphatases are activated, how do cells know?

when there is less glucose in the body the Fructose 2, 6 phosphatases are activated which removes the phosphate from Fructose 2, 6 phosphatase which in turn stops the activation of phosphofrcto kinase-I and eventually stops the forward reaction.

How does it happen?

Phosphorylation of hermaphrodite enzyme

When the level of glucose is low glucagon is released which then binds with its receptor on the plasma membrane and this stimulated receptor is then coupled with G-stimulatory protein in the cell.

The G-stimulatory then stimulates adenyl cyclase which converts ATP to cAMP (cyclic AMP) and the number of cAMP in the cell increases. The cAMP, in turn, activates protein kinase A enzyme which phosphorylates both Fructose 2, 6 phosphatase and phosphofrcto kinase-II enzyme.

In such a situation kinase activity is inhibited and phosphatase activity is activated so it means the Fructose 2, 6 phosphatases are activated which removes phosphate from Fructose 2, 6 bisphosphates, and when phosphate has been removed the concentration of Fructose 2, 6 phosphate decreases which then stop stimulating phosphofrcto kinase-I. This will lead to the stoppage of the forward reaction.

Reverse of Fructose 1, 6 bisphosphatase into Fructose

As already discussed that high concentration of Fructose 2, 6 bisphosphates inhibits the Fructose 1, 6 bisphosphatase enzyme which reverses the Fructose 1, 6 bisphosphates to Fructose-6-phosphate but now the concentration of Fructose 2, 6 bisphosphate decreases so it cannot keep 1, 6 bisphosphatases inhibited so it will be activated and convert back the Fructose 1, 6 bisphosphates to Fructose-6-phosphate so in this way, this step is reversed.

Now let me tell you some of the roles of “protein kinase A”.

When glucagon level increases through multiple steps it activates protein kinase as discussed earlier it not only phosphorylates hermaphrodite (Bifunctional)enzyme but also phosphorylates pyruvate kinase which is inhibited and stops the glycolysis. This protein kinase also phosphorylates pyruvate carboxylase and phosphoenolpyruvate carboxykinase and activates them and reverses the steps for gluconeogenesis as discussed earlier.

This protein also phosphorylates certain transcriptional factors and this transcriptional factor goes to the nucleus and will activate the gluconeogenesis pathway enzymes.

I think you are tired of repeating the names and maybe you get confused but read carefully and logically you will understand everything.

Let’s move to the next step. The Fructose-6-phosphate is converted back to Glucose-6-phosphate by the same enzyme i.e. phosphoglucose isomerase which converts it into Fructose-6-phosphate in the forward direction of glycolysis because their enzyme is a two-way enzyme.

Now we are near to finishing it by converting it to just glucose?

Yes but only with a block remaining. The Glucose-6-phosphate can’t be reversed by the same enzyme i.e. hexokinase converted it in a forward direction because it is a one-way enzyme.

Do you know that cells have endoplasmic reticulum?

Yes, we know.

But what is the function of the endoplasmic reticulum here?

Transfer of Glucose-6-phosphate by Glucose-6-phosphate translocase

A very important function. The endoplasmic reticulum has a special transporter protein called Glucose-6-phosphate translocase which will take the Glucose-6-phosphate and transfer it to the Endoplasmic reticulum.



Reverse of Glucose-6-phosphate to glucose

The endoplasmic reticulum membrane has an enzyme called Glucose-6-phosphatase. This enzyme has a functional domain in the lumen of the Endoplasmic reticulum where it converts the Glucose-6-phosphate to glucose by removing phosphate from it and as already mentioned phosphatase removes phosphate from the molecule, so the product of gluconeogenesis (glucose) ends the gluconeogenesis process. The glucose will move from hepatocytes to blood and muscle back through the gluconeogenesis pathway.

This cycle of pyruvate and lactate to hepatocytes from muscle cells and then the formation of new glucose molecules from it and then returning of glucose to the muscle is called the CORI cycle, besides the fasting state, this happens when muscles are doing constant and heavy exercise.

As already discussed gluconeogenesis occurs in the liver and kidney, do you know why?

liver and kidney, organs of gluconeogenesis


Because the Glucose-6-phosphatase enzyme is only present in liver and kidney cells that’s why gluconeogenesis occurs only in the liver and kidney.


Gluconeogenesis is a complex metabolic pathway with enzymes that is essential for maintaining blood glucose levels. The pathway is the reverse of glycolysis, but it is not simply the reverse of the glycolysis pathway. There are several steps in gluconeogenesis that are catalyzed by different enzymes than the corresponding steps in glycolysis.

The three irreversible steps of glycolysis are reversed in the gluconeogenic pathway. These three steps have problems because they are one-way and cannot be reversed directly, so we have to find alternative pathways and raw materials for the reversal process.

The purpose of gluconeogenesis is to make glucose when there is no or less glucose from non-carbohydrate sources. This is why it is important to first learn glycolysis and the Krebs cycle, as 80% of gluconeogenesis is covered by learning these pathways.




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I am Zaid Haris, a Biology graduate passionate about medical and biological sciences. I teach Biochemistry, physiology, and other branches of Biology. My focus on endocrinology, including diabetes, comes from practicing alongside medical professionals, learning about the beauty of health and the best tools for well-being. Through my blog,, I share easy-to-understand content about medical and biological wonders, aiming to enlighten, inspire, and recommend the best tools for users' health. My mission is to bring a clear perspective to unravel the mysteries of life and help others achieve better health.

My mission? To provide clarity in unraveling the mysteries of life and empower others to achieve optimal health. Discover more about my journey and expertise at About me .

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